7,257 research outputs found

    Inference on survival data with covariate measurement error - an imputation approach

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    ABSTRACT. We propose a new method for fitting proportional hazards models with error-prone covariates. Regression coefficients are estimated by solving an estimating equation that is the average of the partial likelihood scores based on imputed true covariates. For the purpose of imputation, a linear spline model is assumed on the baseline hazard. We discuss consistency and asymptotic normality of the resulting estimators, and propose a stochastic approximation scheme to obtain the estimates. The algorithm is easy to implement, and reduces to the ordinary Cox partial likelihood approach when the measurement error has a degenerate distribution. Simulations indicate high efficiency and robustness. We consider the special case where error-prone replicates are available on the unobserved true covariates. As expected, increasing the number of replicates for the unobserved covariates increases efficiency and reduces bias. We illustrate the practical utility of the proposed method with an Eastern Cooperative Oncology Group clinical trial where a genetic marker, c-myc expression level, is subject to measurement error

    A new allele for aluminium tolerance gene in barley (Hordeum vulgare L.)

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    Background Aluminium (Al) toxicity is the main factor limiting the crop production in acid soils and barley (Hordeum vulgare L.) is one of the most Al-sensitive of the small-grained cereals. The major gene for Al tolerance in barley is HvAACT1 (HvMATE) on chromosome 4H which encodes a multidrug and toxic compound extrusion (MATE) protein. The HvAACT1 protein facilitates the Al-activated release of citrate from root apices which protects the growing cells and enables root elongation to continue. A 1 kb transposable element-like insert in the 5’ untranslated region (UTR) of HvAACT1 is associated with increased gene expression and tolerance and a PCR-based marker is available to score for this insertion. Results We screened a wide range of barley genotypes for Al tolerance and identified a moderately tolerant Chinese genotype named CXHKSL which did not show the typical allele in the 5’ UTR of HvAACT1 associated with tolerance. We investigated the mechanism of Al tolerance in CXHKSL and concluded it also relies on the Al-activated release of citrate from roots. Quantitative trait loci (QTL) analysis of double haploid lines generated with CXHKSL and the Al-sensitive variety Gairdner mapped the tolerance locus to the same region as HvAACT1 on chromosome 4H. Conclusions Our results show that the Chinese barley genotype CXHKSL possesses a novel allele of the major Al tolerance gene HvAACT1

    Weak Spin Fluctuation with Finite Wave Vector and Superconducting Gap Symmetry in KxFe2-ySe2: 77Se Nuclear Magnetic Resonance

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    We report 77^{77}Se-nuclear magnetic resonance (NMR) results down to sufficiently low temperatures under magnetic fields parallel to both the abab-plane and the c-axis in a paramagnetic/superconducting (PM/SC) phase of Kx_xFe2y_{2-y}Se2_2. The observation of anisotropy in the orbital part of the Knight shift results in the anisotropy of its spin part increasing on approaching the transition temperature. The anisotropy of the Korringa relation suggests the presence of the weak spin fluctuations with a finite wave vector q\bm{q}, which induce the magnetic fluctuations along the ab-plane at the Se site. Such fluctuations do not correspond to the stripe (π,0)(\pi,0) correlation of the Fe moment observed in many Fe-based superconductors, and are not contradictory to weak (π,π)(\pi,\pi) correlations. The nuclear spin-lattice relaxation rate 1/T11/T_1 shows a field-independent T1Tconst.T_1T \sim const. behavior at low temperatures for HabH \parallel ab, which is attributed to the nonzero density of states at the Fermi level and can be explained by the sign-changing order parameter even for nodeless gaps. The temperature dependence of 1/T11/T_1 is reproduced well by nodeless models with two isotropic gaps or a single anisotropic gap. The obtained gap magnitude in the isotropic two-gap model is comparable to those obtained in the angle-resolved photoemission spectroscopy experiments.Comment: 6 pages, 6 figures, Accepted for the publication in J. Phys. Soc. Jp

    Development and psychometric validation of the Chinese version of Skindex-29 and Skindex-16

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    BACKGROUND: Dermatological disease significantly affects patient’s health-related quality of life (HrQoL). Skindex is one of the most frequently used dermatology-specific HrQoL measures. Currently no Chinese version of Skindex is available. The aim of this study was to translate and culturally adapt Skindex-29 and Skindex-16 into Chinese, and to evaluate their reliability and validity. METHODS: Translation and cultural adaption were performed following guidelines for cross-cultural adaption of health-related quality of life measures. Subsequently, a cross-sectional study was conducted in which patients with dermatological disease (n = 225) were enrolled. The Chinese version of Skindex-29 and Skindex-16 and Dermatology Life Quality Index (DLQI) were completed. Reliability was evaluated with internal consistency using Cronbach’s alpha. Validity was evaluated using known-groups validity, convergent validity and factor structure validity. RESULTS: There were both seven items of Skindex-29 and Skindex-16 requiring a second forward- and backward- translation to achieve the final satisfactory Chinese version. The internal consistency reliability was high (range of Cronbach’s alpha for the scales of Skindex-29 0.85-0.97, Skindex-16 0.86-0.96). Known-group validity was demonstrated by higher scores from patients with inflammatory dermatosis than from patients with isolated skin lesions (P < 0.05). Evidence of factor structure validity of the Skindex-29 and Skindex-16 was demonstrated by both exploratory factor analysis that accounted for 68.66% and 77.78% of the total variance, respectively, and confirmatory factor analysis with acceptable fitness into the expected three-factor structure. CONCLUSION: This study has developed semantically equivalent translations of Skindex-29 and Skindex-16 into Chinese. The evaluation of the instruments’ psychometric properties shows they have substantial evidence of reliability and validity for use as HrQoL instruments in Chinese patients with dermatological disease

    Evaluation of Concussion Incidence and Modulating Factors in the 2013-2017 Australian Football League

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    The increasing awareness and popularization of concussions in the research realm over the last few years have begun to shed more light on the detrimental effects associated with repetitive head trauma. While the majority of the current literature focuses on the National Football League (NFL) and National Hockey League (NHL), several other high-impact sports have been implementing concussion management protocols to protect their players. The Australian Football League (AFL) is a prime example of a major contact sport that has undertaken recent changes to its concussion assessment and management modalities. We recognize the benefit of reporting potential changes in concussion rates over the 2013-2017 AFL seasons. We were interested in some of the factors not yet evaluated before, which may contribute to the overall concussion incidence such as “style-of-play” factors” (home/away, win/loss, points scored, time of season). We hope the results of this analysis shed light on the mechanisms by which concussion rates can be mitigated across major contact sports
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